/*
 *   Copyright (C) 2006  The Concord Consortium, Inc.,
 *   25 Love Lane, Concord, MA 01742
 *
 *   This program is free software; you can redistribute it and/or modify
 *   it under the terms of the GNU General Public License as published by
 *   the Free Software Foundation; either version 2 of the License, or
 *   (at your option) any later version.
 *
 *   This program is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *   GNU General Public License for more details.
 *
 *   You should have received a copy of the GNU General Public License
 *   along with this program; if not, write to the Free Software
 *   Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 *
 * END LICENSE */

package org.concord.molbio.engine;

import java.util.Vector;

class Chromosome {

	DNA dna;
	Vector<Gene> genes = new Vector<Gene>();

	protected Chromosome(DNA dna) {
		this.dna = dna;
	}

	protected void addGene(Gene g) {
		addGene(g, DNA.DNA_STRAND_BASE);
	}

	protected void addGene(Gene g, int strandIndex) {
		if (g == null)
			return;
		if (!genes.contains(g)) {
			genes.addElement(g);
			g.setDNA(dna, strandIndex);
		}
	}
}